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Basics

Name Benjamin Lewis
Label Scientist
Email benlewis.biology @ gmail.com
Url https://gitbenlewis.github.io/
Summary I am a biological data scientist, with a strong wet lab prior.

Work

  • 2024.04 - present
    Bioinformatics Scientist II
    Actio Biosciences
    Single cell transcriptomics/multiomics
    • Single cell transcriptomics/multiomics, Target Triage, Biomarker Discovery
  • 2022.04 - 2024.03
    Scientist I, R&D
    Aspen Neuroscience
    Single cell transcriptomics/multiomics
    • Single cell transcriptomics/multiomics
  • 2013.06 - 2013.12
    Research and Development Intern
    Hardy Diagnostics,
    Designed and developed chromogenic diagnostic media formulations

Education

  • 2016.09 - 2022.03

    San Diego, California, USA

    PhD
    University of California, San Diego
    Molecular Biology
    • Quantitative Methods in Genetics and Genomics
    • Statistical Methods in Bioinformatics
  • 2013.09 - 2015.06

    San Luis Obispo, California, USA

    Master of Science (MS)
    California Polytechnic State University
    Stem Cell Research
  • 2008.09 - 2013.06

    San Luis Obispo, California, USA

    Bachelor of Science (BS)
    California Polytechnic State University
    Biochemistry and Microbiology (Double Major)

Publications

Skills

Bioinformatics and Statistical Analysis
Multiomic data analysis (Single-cell transcriptomics, Proteomics, ATAC-seq, CLIP-seq)
Predictive machine learning model design and implementation
Data visualization and statistical analysis
Programming and Computational Skills
Python (pandas, matplotlib, seaborn, scikit-learn, scanpy/adata, scvi-tools, PyTorch)
Linux
AWS and Cloud/High-Performance Computing Environments
GitHub
R
Nextflow-based RNAseq pipelines
Molecular Biology
Viral vector design and production
Gene cloning and DNA assembly techniques
NGS/qPCR analysis
RNA manipulation and analysis techniques
Immunoblotting
Cellular Biology and Analysis
CRISPR/Cas9 gene editing in iPSCs and cell lines
Stem cell-based disease modeling
Extracellular flux analysis
Flow cytometry techniques and analysis (FACS)
Live cell imaging
Microscopy and Imaging
Immunofluorescence microscopy
Confocal microscopy
Brightfield microscopy
Plate scanning

Languages

English
Native speaker